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The lysine‐specific methyltransferase KMT2C/MLL3 regulates DNA repair components in cancer

View ORCID ProfileTheodoros Rampias, View ORCID ProfileDimitris Karagiannis, View ORCID ProfileMargaritis Avgeris, Alexander Polyzos, Antonis Kokkalis, Zoi Kanaki, Evgenia Kousidou, Maria Tzetis, Emmanouil Kanavakis, Konstantinos Stravodimos, Kalliopi N Manola, Gabriel E Pantelias, Andreas Scorilas, View ORCID ProfileApostolos Klinakis
DOI 10.15252/embr.201846821 | Published online 21.01.2019
EMBO reports (2019) e46821
Theodoros Rampias
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Dimitris Karagiannis
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Margaritis Avgeris
Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece
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Alexander Polyzos
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Antonis Kokkalis
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Zoi Kanaki
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Evgenia Kousidou
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Maria Tzetis
Department of Medical Genetics, Medical School, “Aghia Sophia” Children's Hospital, National and Kapodistrian University of Athens, Athens, Greece
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Emmanouil Kanavakis
Department of Medical Genetics, Medical School, “Aghia Sophia” Children's Hospital, National and Kapodistrian University of Athens, Athens, GreeceUniversity Research Institute for the Study and Treatment of Childhood Genetic and Malignant Diseases, “Aghia Sophia” Children's Hospital, National and Kapodistrian University of Athens, Athens, Greece
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Konstantinos Stravodimos
First Department of Urology, “Laiko” General Hospital, Medical School, National and Kapodistrian University of Athens, Athens, Greece
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Kalliopi N Manola
Laboratory of Health Physics, Radiobiology & Cytogenetics, National Center for Scientific Research (NCSR) “Demokritos”, Athens, Greece
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Gabriel E Pantelias
Laboratory of Health Physics, Radiobiology & Cytogenetics, National Center for Scientific Research (NCSR) “Demokritos”, Athens, Greece
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Andreas Scorilas
Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece
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Apostolos Klinakis
Biomedical Research Foundation Academy of Athens, Athens, Greece
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Author Affiliations

  1. Theodoros Rampias1,
  2. Dimitris Karagiannis1,
  3. Margaritis Avgeris2,
  4. Alexander Polyzos1,
  5. Antonis Kokkalis1,
  6. Zoi Kanaki1,
  7. Evgenia Kousidou1,
  8. Maria Tzetis3,
  9. Emmanouil Kanavakis3,4,
  10. Konstantinos Stravodimos5,
  11. Kalliopi N Manola6,
  12. Gabriel E Pantelias6,
  13. Andreas Scorilas2 and
  14. Apostolos Klinakis (aklinakis{at}bioacademy.gr)*,1
  1. 1Biomedical Research Foundation Academy of Athens, Athens, Greece
  2. 2Department of Biochemistry and Molecular Biology, Faculty of Biology, National and Kapodistrian University of Athens, Athens, Greece
  3. 3Department of Medical Genetics, Medical School, “Aghia Sophia” Children's Hospital, National and Kapodistrian University of Athens, Athens, Greece
  4. 4University Research Institute for the Study and Treatment of Childhood Genetic and Malignant Diseases, “Aghia Sophia” Children's Hospital, National and Kapodistrian University of Athens, Athens, Greece
  5. 5First Department of Urology, “Laiko” General Hospital, Medical School, National and Kapodistrian University of Athens, Athens, Greece
  6. 6Laboratory of Health Physics, Radiobiology & Cytogenetics, National Center for Scientific Research (NCSR) “Demokritos”, Athens, Greece
  1. ↵*Corresponding author. Tel: +30 2106597069; E‐mail: aklinakis{at}bioacademy.gr
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Abstract

Genome‐wide studies in tumor cells have indicated that chromatin‐modifying proteins are commonly mutated in human cancers. The lysine‐specific methyltransferase 2C (KMT2C/MLL3) is a putative tumor suppressor in several epithelia and in myeloid cells. Here, we show that downregulation of KMT2C in bladder cancer cells leads to extensive changes in the epigenetic status and the expression of DNA damage response and DNA repair genes. More specifically, cells with low KMT2C activity are deficient in homologous recombination‐mediated double‐strand break DNA repair. Consequently, these cells suffer from substantially higher endogenous DNA damage and genomic instability. Finally, these cells seem to rely heavily on PARP1/2 for DNA repair, and treatment with the PARP1/2 inhibitor olaparib leads to synthetic lethality, suggesting that cancer cells with low KMT2C expression are attractive targets for therapies with PARP1/2 inhibitors.

Synopsis

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The histone methyltransferase KMT2C/MLL3 is commonly mutated in cancer and involved in the transcriptional regulation of several DNA repair genes. Its loss leads to increased DNA damage and dependence on PARP1/2.

  • KMT2C loss in bladder cancer cells affects the expression of DNA repair genes.

  • KMT2C loss leads to extensive chromosomal instability as well as elevated DNA damage.

  • KMT2C‐depleted cancer cells depend on PARP1/2 and are sensitive to PARP inhibitors.

  • DNA repair
  • epigenetic regulation
  • KMT2C
  • PARPi sensitivity

EMBO Reports (2019) e46821

  • Received July 27, 2018.
  • Revision received December 17, 2018.
  • Accepted December 19, 2018.
  • © 2019 The Authors
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Volume 20, Issue 2
01 February 2019
EMBO reports: 20 (2)
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Subject Areas

  • Cancer
  • Chromatin, Epigenetics, Genomics & Functional Genomics
  • DNA Replication, Repair & Recombination

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